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Image Search Results


Gene contents in 61 complete chloroplast genomes of Medicago ruthenica .

Journal: International Journal of Molecular Sciences

Article Title: Comparative Chloroplast Genomes Analysis Provided Adaptive Evolution Insights in Medicago ruthenica

doi: 10.3390/ijms25168689

Figure Lengend Snippet: Gene contents in 61 complete chloroplast genomes of Medicago ruthenica .

Article Snippet: The raw sequence data of 70 Medicago ruthenica leaf DNA sequencing datasets (19 cultivated species and 51 wild species) were received from the SRA database ( https://www.ncbi.nlm.nih.gov/sra ) (accessed on 20 December 2023) on the NCBI website including PRJNA598783 and PRJNA692663.

Techniques: Functional Assay, Membrane

The pan-chloroplast of Medicago ruthenica . Genes shown on the outside of the first outer ring are transcribed counter-clockwise, while those on the inside are transcribed clockwise. Different functional groups of genes are color-coded. The dark grey bars on the second outer ring correspond to GC content.

Journal: International Journal of Molecular Sciences

Article Title: Comparative Chloroplast Genomes Analysis Provided Adaptive Evolution Insights in Medicago ruthenica

doi: 10.3390/ijms25168689

Figure Lengend Snippet: The pan-chloroplast of Medicago ruthenica . Genes shown on the outside of the first outer ring are transcribed counter-clockwise, while those on the inside are transcribed clockwise. Different functional groups of genes are color-coded. The dark grey bars on the second outer ring correspond to GC content.

Article Snippet: The raw sequence data of 70 Medicago ruthenica leaf DNA sequencing datasets (19 cultivated species and 51 wild species) were received from the SRA database ( https://www.ncbi.nlm.nih.gov/sra ) (accessed on 20 December 2023) on the NCBI website including PRJNA598783 and PRJNA692663.

Techniques: Functional Assay

The complete chloroplast genome sequences of Medicago ruthenica were visualized with the pan-chloroplast genome as a reference. Gray arrows and thick black lines represent the orientation of genes. Purple bars indicate exons, sky-blue bars denote untranslated regions (UTRs), and red bars highlight non-coding sequences (CNS). Gray bars correspond to mRNA, while white regions show sequence differences among all analyzed chloroplast genomes. The horizontal axis shows the positions within the chloroplast genome, and the vertical scale indicates the identity percentage, ranging from 50% to 100%. ( a ) W1, W2, and W3 are cultivated varieties from the western region, while W4, W6, and W15 are wild varieties from the western region. ( b ) E1, E4, and E5 are cultivated varieties from the eastern region, while E15, E17, and E23 are wild varieties from the eastern region.

Journal: International Journal of Molecular Sciences

Article Title: Comparative Chloroplast Genomes Analysis Provided Adaptive Evolution Insights in Medicago ruthenica

doi: 10.3390/ijms25168689

Figure Lengend Snippet: The complete chloroplast genome sequences of Medicago ruthenica were visualized with the pan-chloroplast genome as a reference. Gray arrows and thick black lines represent the orientation of genes. Purple bars indicate exons, sky-blue bars denote untranslated regions (UTRs), and red bars highlight non-coding sequences (CNS). Gray bars correspond to mRNA, while white regions show sequence differences among all analyzed chloroplast genomes. The horizontal axis shows the positions within the chloroplast genome, and the vertical scale indicates the identity percentage, ranging from 50% to 100%. ( a ) W1, W2, and W3 are cultivated varieties from the western region, while W4, W6, and W15 are wild varieties from the western region. ( b ) E1, E4, and E5 are cultivated varieties from the eastern region, while E15, E17, and E23 are wild varieties from the eastern region.

Article Snippet: The raw sequence data of 70 Medicago ruthenica leaf DNA sequencing datasets (19 cultivated species and 51 wild species) were received from the SRA database ( https://www.ncbi.nlm.nih.gov/sra ) (accessed on 20 December 2023) on the NCBI website including PRJNA598783 and PRJNA692663.

Techniques: Sequencing, Western Blot

The nucleotide diversity (π) values in Medicago ruthenica chloroplast genome. Nucleotide diversity by sliding window analysis in 61 complete chloroplast genomes. Window length: 1000 bp, step size: 200 bp.

Journal: International Journal of Molecular Sciences

Article Title: Comparative Chloroplast Genomes Analysis Provided Adaptive Evolution Insights in Medicago ruthenica

doi: 10.3390/ijms25168689

Figure Lengend Snippet: The nucleotide diversity (π) values in Medicago ruthenica chloroplast genome. Nucleotide diversity by sliding window analysis in 61 complete chloroplast genomes. Window length: 1000 bp, step size: 200 bp.

Article Snippet: The raw sequence data of 70 Medicago ruthenica leaf DNA sequencing datasets (19 cultivated species and 51 wild species) were received from the SRA database ( https://www.ncbi.nlm.nih.gov/sra ) (accessed on 20 December 2023) on the NCBI website including PRJNA598783 and PRJNA692663.

Techniques:

The evolutionary values of the Ka/Ks ratio in Medicago ruthenica .

Journal: International Journal of Molecular Sciences

Article Title: Comparative Chloroplast Genomes Analysis Provided Adaptive Evolution Insights in Medicago ruthenica

doi: 10.3390/ijms25168689

Figure Lengend Snippet: The evolutionary values of the Ka/Ks ratio in Medicago ruthenica .

Article Snippet: The raw sequence data of 70 Medicago ruthenica leaf DNA sequencing datasets (19 cultivated species and 51 wild species) were received from the SRA database ( https://www.ncbi.nlm.nih.gov/sra ) (accessed on 20 December 2023) on the NCBI website including PRJNA598783 and PRJNA692663.

Techniques:

Phylogenetic relationships and haplotypes of Medicago ruthenica based on complete chloroplast genome sequences. ( a ) The phylogenetic tree was established by the maximum likelihood method, with bootstrap replications set to 1000. Red represents the varieties from the western region, and blue represents the varieties from the eastern region, corresponding to the color scheme throughout the figure. ( b ) Haplotype network of Medicago ruthenica chloroplasts. Each circle in the haplotype network represents a unique haplotype, with the size of the circle proportional to the frequency of the haplotype. Lines connecting the circles indicate mutational steps between haplotypes. The colors within the circles are consistent with those in the phylogenetic tree.

Journal: International Journal of Molecular Sciences

Article Title: Comparative Chloroplast Genomes Analysis Provided Adaptive Evolution Insights in Medicago ruthenica

doi: 10.3390/ijms25168689

Figure Lengend Snippet: Phylogenetic relationships and haplotypes of Medicago ruthenica based on complete chloroplast genome sequences. ( a ) The phylogenetic tree was established by the maximum likelihood method, with bootstrap replications set to 1000. Red represents the varieties from the western region, and blue represents the varieties from the eastern region, corresponding to the color scheme throughout the figure. ( b ) Haplotype network of Medicago ruthenica chloroplasts. Each circle in the haplotype network represents a unique haplotype, with the size of the circle proportional to the frequency of the haplotype. Lines connecting the circles indicate mutational steps between haplotypes. The colors within the circles are consistent with those in the phylogenetic tree.

Article Snippet: The raw sequence data of 70 Medicago ruthenica leaf DNA sequencing datasets (19 cultivated species and 51 wild species) were received from the SRA database ( https://www.ncbi.nlm.nih.gov/sra ) (accessed on 20 December 2023) on the NCBI website including PRJNA598783 and PRJNA692663.

Techniques: Western Blot

Haplotype classification of 61 Medicago ruthenica chloroplast genomes.

Journal: International Journal of Molecular Sciences

Article Title: Comparative Chloroplast Genomes Analysis Provided Adaptive Evolution Insights in Medicago ruthenica

doi: 10.3390/ijms25168689

Figure Lengend Snippet: Haplotype classification of 61 Medicago ruthenica chloroplast genomes.

Article Snippet: The raw sequence data of 70 Medicago ruthenica leaf DNA sequencing datasets (19 cultivated species and 51 wild species) were received from the SRA database ( https://www.ncbi.nlm.nih.gov/sra ) (accessed on 20 December 2023) on the NCBI website including PRJNA598783 and PRJNA692663.

Techniques:

The phylogenetic tree was constructed based on SNPs across the genomes of the Medicago ruthenica . Red represents varieties from the western region, blue represents varieties from the eastern region, and green represents varieties from the intermediate region.

Journal: International Journal of Molecular Sciences

Article Title: Comparative Chloroplast Genomes Analysis Provided Adaptive Evolution Insights in Medicago ruthenica

doi: 10.3390/ijms25168689

Figure Lengend Snippet: The phylogenetic tree was constructed based on SNPs across the genomes of the Medicago ruthenica . Red represents varieties from the western region, blue represents varieties from the eastern region, and green represents varieties from the intermediate region.

Article Snippet: The raw sequence data of 70 Medicago ruthenica leaf DNA sequencing datasets (19 cultivated species and 51 wild species) were received from the SRA database ( https://www.ncbi.nlm.nih.gov/sra ) (accessed on 20 December 2023) on the NCBI website including PRJNA598783 and PRJNA692663.

Techniques: Construct, Western Blot

( a ) Heatmap of chloroplast gene expression in Medicago ruthenica under abiotic stress. ( b ) Number of upregulated genes under different abiotic stresses. ( c ) Number of downregulated genes under different abiotic stresses.

Journal: International Journal of Molecular Sciences

Article Title: Comparative Chloroplast Genomes Analysis Provided Adaptive Evolution Insights in Medicago ruthenica

doi: 10.3390/ijms25168689

Figure Lengend Snippet: ( a ) Heatmap of chloroplast gene expression in Medicago ruthenica under abiotic stress. ( b ) Number of upregulated genes under different abiotic stresses. ( c ) Number of downregulated genes under different abiotic stresses.

Article Snippet: The raw sequence data of 70 Medicago ruthenica leaf DNA sequencing datasets (19 cultivated species and 51 wild species) were received from the SRA database ( https://www.ncbi.nlm.nih.gov/sra ) (accessed on 20 December 2023) on the NCBI website including PRJNA598783 and PRJNA692663.

Techniques: Gene Expression

RNA editing efficiency in chloroplast genes under abiotic stress in Medicago ruthenica .

Journal: International Journal of Molecular Sciences

Article Title: Comparative Chloroplast Genomes Analysis Provided Adaptive Evolution Insights in Medicago ruthenica

doi: 10.3390/ijms25168689

Figure Lengend Snippet: RNA editing efficiency in chloroplast genes under abiotic stress in Medicago ruthenica .

Article Snippet: The raw sequence data of 70 Medicago ruthenica leaf DNA sequencing datasets (19 cultivated species and 51 wild species) were received from the SRA database ( https://www.ncbi.nlm.nih.gov/sra ) (accessed on 20 December 2023) on the NCBI website including PRJNA598783 and PRJNA692663.

Techniques: